rs6333252 SNP Detail

Summary

• ID
  rs6333252
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26839705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGAGAG AAAAAGAGAC
  ACGTGCTTAC ACCACACACA CACACACACA CACACACACA CACACACACA CACACACATG
  CCCTCACACC ACACACACAT ACATACAAAC ACCACATATA CCATACACAC ACACACCACG
  TACACATACA CATGCCACGC ACACACATGC GTGTACACAT GCACACACAG CCTGGCCTGC
  W
  GCTTTGGCCT TTCAGTAGCC CCGAGAGGTG TTAATTCTTG CTCGTCTCCT TTTTCCCTAC
  TGTTCCTTCA CTGGTTCCCT CGGTGAGGTG TGTATGACTT ACAGCAGGTG CACAAGCCCA
  GAACTCAGTG ATCAGTGAGT CTCCCCTTCA CAGTATCATC TCAGCTGAGC CAGGATGCAC
  GAGCCATGAC TTCTGCTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8739260	WI_WGS_17_25805657	WI	MOUSE	f	SNP							T		A
ss60554454	NES16568380	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		A		T	T	A		A	T	T	A		T
ss325342565	CHEV_17_26757676	CHEVERUD	SCREENING_POP	f	SNP													T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6333252					SNP	T	T	T	T	T	T	T	A	A	T	T	A	T	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554454	NES16568380	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26839705 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523901	regulatory region 523901	1744 bp distal
Rr523902	regulatory region 523902	265 bp distal
Rr523903	regulatory region 523903	228 bp proximal
Rr523904	regulatory region 523904	729 bp proximal
Tssr143257	transcription start site region 143257	781 bp upstream