rs6333553 SNP Detail

Summary

• ID
  rs6333553
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142608883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTACAAC TGGTGGACAC
  CACCCTGGCA GAGGGACTCC TTTTGTCCCT CGTGTGGCAA GGTTTGTACT GTGGCTGATA
  GTTCCCTGAT ATCATGAAAT TGAACCTTTG GGGAGCCCCA CCCCACCACT CTGGCCCTTA
  GTCTTCACTT CCTCCCTCTA AAGTGGGAGT TCTTGGGGGT CTCTGTCTCC TAGGATTGTG
  K
  GTAGACTAGC TAATGTACTC CAGAGTGGGG CAAGGGGCTT GGAGCAGAGA AGGCTCAGGA
  AATGGACACT GGACACAGTC TCCAAAAGGG AGTGGGGCCA AAGGAAGCTG AGCAATGATG
  TCAGAAGGGC CTAAGGAGGG GGCTGAGAGG TCCTTTGGGC CGTGGTGGGG GCGGGGGCTA
  AGAGCTCTAA GAAGGGAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8739563	WI_WGS_7_133491653	WI	MOUSE	f	SNP	T	G
ss322473940	CHEV_7_150241051	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6333553					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142608883 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	within coordinates
Cpgi19971	CpG island 19971	1466 bp distal
R74862	expressed sequence R74862	1460 bp upstream
Rr167007	regulatory region 167007	within coordinates
Rr381610	regulatory region 381610	within coordinates
Tssr70270	transcription start site region 70270	1663 bp downstream
Tssr70271	transcription start site region 70271	1603 bp downstream
Tssr70272	transcription start site region 70272	1577 bp downstream
Tssr75917	transcription start site region 75917	1687 bp upstream