rs6333697 SNP Detail

Summary

• ID
  rs6333697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105287809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCCCCA AACACACGAA
  ATGACCTCTC TGAAGAAGGA CTATCTAGAC AGACAACTGC ATTCTTCTGG TCACTAGGGG
  GAACAAGGAC TCATGTCCTG ACAACCAAAT CAATTCAATG TATGTATCTG GCATTCTTGG
  AGTAGGGTAG GAGTGTTGTT GGTGTACGAG ATAAGCGGGA ATAGAAGCAA ACATGACATG
  Y
  GCGATTGGCA GGATCAAAGA TGGTGAACAC AGAAAAACAG AGAAGTTGGC TTATATTTCT
  AGGTAGAATT CTAGCCAGTA AAAGAGTCTA AAATGAAACT CTGAGAAGCC TCACAAAGCT
  CCAAACTGGC CTTAAGCTCC TGAGTGCTCA TAACCTTAAG GTCTTAACTT GGCTCAGATG
  GTGGCGGCAA GGAGGAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss8739707	WI_WGS_7_95408026	WI	MOUSE	f	SNP		T	C
ss51920954	NES14946610	PERLEGEN	MM_PANEL2	f	SNP	T			C	T		C	C	T	C
ss322370112	CHEV_7_112787116	CHEVERUD	SCREENING_POP	f	SNP						T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs6333697					SNP	T	T	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920954	NES14946610	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105287809 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	within coordinates
Cpgi19541	CpG island 19541	1482 bp proximal
Gm45799	predicted gene 45799	1950 bp upstream
Rr400513	regulatory region 400513	1646 bp upstream
Rr652793	regulatory region 652793	964 bp proximal
Rr652794	regulatory region 652794	1465 bp proximal
Rr652795	regulatory region 652795	1704 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	1454 bp upstream
Tssr2358	transcription start site region 2358	1814 bp upstream
Tssr68382	transcription start site region 68382	1861 bp upstream
Tssr68383	transcription start site region 68383	1920 bp upstream
Tssr74083	transcription start site region 74083	1715 bp downstream