rs6333698 SNP Detail

Summary

• ID
  rs6333698
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105287812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCAAAC ACACGAAATG
  ACCTCTCTGA AGAAGGACTA TCTAGACAGA CAACTGCATT CTTCTGGTCA CTAGGGGGAA
  CAAGGACTCA TGTCCTGACA ACCAAATCAA TTCAATGTAT GTATCTGGCA TTCTTGGAGT
  AGGGTAGGAG TGTTGTTGGT GTACGAGATA AGCGGGAATA GAAGCAAACA TGACATGTGC
  R
  ATTGGCAGGA TCAAAGATGG TGAACACAGA AAAACAGAGA AGTTGGCTTA TATTTCTAGG
  TAGAATTCTA GCCAGTAAAA GAGTCTAAAA TGAAACTCTG AGAAGCCTCA CAAAGCTCCA
  AACTGGCCTT AAGCTCCTGA GTGCTCATAA CCTTAAGGTC TTAACTTGGC TCAGATGGTG
  GCGGCAAGGA GGAGAAGACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8739709	WI_WGS_7_95408029	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6333698					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105287812 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	within coordinates
Cpgi19541	CpG island 19541	1479 bp proximal
Gm45799	predicted gene 45799	1947 bp upstream
Rr400513	regulatory region 400513	1643 bp upstream
Rr652793	regulatory region 652793	961 bp proximal
Rr652794	regulatory region 652794	1462 bp proximal
Rr652795	regulatory region 652795	1701 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	1451 bp upstream
Tssr2358	transcription start site region 2358	1811 bp upstream
Tssr68382	transcription start site region 68382	1858 bp upstream
Tssr68383	transcription start site region 68383	1917 bp upstream
Tssr74083	transcription start site region 74083	1712 bp downstream