rs6333742 SNP Detail

Summary

• ID
  rs6333742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105287835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTTCTGTGGC
  TCACTCCTCC CCCCCACCCC CCCAAACACA CGAAATGACC TCTCTGAAGA AGGACTATCT
  AGACAGACAA CTGCATTCTT CTGGTCACTA GGGGGAACAA GGACTCATGT CCTGACAACC
  AAATCAATTC AATGTATGTA TCTGGCATTC TTGGAGTAGG GTAGGAGTGT TGTTGGTGTA
  CGAGATAAGC GGGAATAGAA GCAAACATGA CATGNGCNAT TGGCAGGATC AAAGATGGTG
  R
  ACACAGAAAA ACAGAGAAGT TGGCTTATAT TTCTAGGTAG AATTCTAGCC AGTAAAAGAG
  TCTAAAATGA AACTCTGAGA AGCCTCACAA AGCTCCAAAC TGGCCTTAAG CTCCTGAGTG
  CTCATAACCT TAAGGTCTTA ACTTGGCTCA GATGGTGGCG GCAAGGAGGA GAAGACGAGT
  GAGATTATCT TCGAGACTGA CTGGCCAGTG GGAGGCAGAT GGGCAACTCT GGGAGCTGGC
  CTGGGACTGG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8739753	WI_WGS_7_95408052	WI	MOUSE	f	SNP		A	G
ss51920953	NES14946611	PERLEGEN	MM_PANEL2	f	SNP	A			A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6333742					SNP	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920953	NES14946611	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105287835 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	within coordinates
Cpgi19541	CpG island 19541	1456 bp proximal
Gm45799	predicted gene 45799	1924 bp upstream
Rr400513	regulatory region 400513	1620 bp upstream
Rr652793	regulatory region 652793	938 bp proximal
Rr652794	regulatory region 652794	1439 bp proximal
Rr652795	regulatory region 652795	1678 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	1428 bp upstream
Tssr2358	transcription start site region 2358	1788 bp upstream
Tssr68382	transcription start site region 68382	1835 bp upstream
Tssr68383	transcription start site region 68383	1894 bp upstream
Tssr74083	transcription start site region 74083	1689 bp downstream