rs6334114 SNP Detail

Summary

• ID
  rs6334114
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7298110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGTCGC CTGGCACCCA
  GGTGCCCGCG TGCTTCGTTG CTAGGACACC AGTAAACACC CGCCCGCCGC GCTGGAAGCC
  CCAGCCTGGG AGGAAACACT GAGTGACTCC AGCCTCTAGT CGCTGCTGCT CAGAACCCAG
  AGCCCTGCAT CTTGAAAACA CCAGGATTCT TCCAGCAGCC TGCAGAGCCC TAGGGCTCAT
  S
  CCAGCTCAGT CTAGGTACTT GGGAGCAGCT TTGGAAATGG AAGAGAGGGC ACTCAGAAAA
  GAGACATTAG AATATCCTGT GATGTTTCAC GGGCATATTT TCTCACAGGC ATATGTTTCT
  CCAGACAAGC ATAATCTAAG TACTGAATCT ATCGAAACCC TCAAAAATTG CAACCACTCT
  CTCTTAGGAT ATTTGAGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8740126	WI_WGS_18_7157667	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6334114					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7298110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9684	CpG island 9684	66 bp distal
Gm58896	predicted gene, 58896	within coordinates
Odad2	outer dynein arm docking complex subunit 2	174 bp upstream
Tssr152370	transcription start site region 152370	1038 bp upstream