rs6334141 SNP Detail

Summary

• ID
  rs6334141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89363295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAC ATGAGGATTT GGGGATACAT
  Y
  CTTTTAATAG TTATTATCCT AGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8740153	WI_WGS_8_88376963	WI	MOUSE	f	SNP							T		C
ss46261223	mCV24087119	ABI	CRAMUS_MOUSE	f	SNP		T					T			C
ss60646313	NES16265263	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T		C		C	C	C		T	C	C	C		C
ss145481220	ENSMUSSNP6892960	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
ss322766265	CHEV_8_91160566	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6334141					SNP	C	T	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60646313	NES16265263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89363295 () rs orientation: forward

Symbol	Name	Function Class
Rr187078	regulatory region 187078	294 bp distal
Rr382438	regulatory region 382438	within coordinates
Snx20	sorting nexin 20	539 bp upstream
Tssr82357	transcription start site region 82357	680 bp upstream
Tssr82358	transcription start site region 82358	551 bp upstream
Tssr82359	transcription start site region 82359	535 bp upstream
Tssr82360	transcription start site region 82360	504 bp upstream