rs6334235 SNP Detail

Summary

• ID
  rs6334235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26839852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATGCCA CGCACACACA
  TGCGTGTACA CATGCACACA CAGCCTGGCC TGCTGCTTTG GCCTTTCAGT AGCCCCGAGA
  GGTGTTAATT CTTGCTCGTC TCCTTTTTCC CTACTGTTCC TTCACTGGTT CCCTCGGTGA
  GGTGTGTATG ACTTACAGCA GGTGCACAAG CCCAGAACTC AGTGATCAGT GAGTCTCCCC
  Y
  TCACAGTATC ATCTCAGCTG AGCCAGGATG CACGAGCCAT GACTTCTGCT TTCTAGAAGG
  TTCTTTTGCA GCTCCTCCTC CTGCCATTCT TTAGACTTCT ATTGTCCTGG GTTAATTTGC
  TTCTTATAAA CTCCACCCAG GACTTCTCCA TTTACCCTGA TGAGGAAGCT GGGGCTCAGA
  GGTGAAGCAC CTGTCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8740247	WI_WGS_17_25805804	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6334235					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26839852 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523901	regulatory region 523901	1891 bp distal
Rr523902	regulatory region 523902	412 bp distal
Rr523903	regulatory region 523903	81 bp proximal
Rr523904	regulatory region 523904	582 bp proximal
Tssr143257	transcription start site region 143257	634 bp upstream