rs6334295 SNP Detail

Summary

• ID
  rs6334295
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47773657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTAGAA AAAGTCTTTA
  TTTTTATTTT GTGTGTATGA GTGTTTTGTC TGTGTGTATG TATGTGCACC ACATGTGTGC
  CTGGTGCCCA TGGAAGCAAG AAGAGGATGC CGGATCCCTG GGGACTGGTT GTCAGCCTCA
  CGTGGATGTT GGAAACTGAG TCTTCTGCAA GAGCAACAGA TGCCCTAAAG ACTAGGCACT
  M
  TCTCTAAGTC ACCACCCCCA CCCCCTTTTG TCTACTCAGG TTTTCTATTT TGTTAATTTA
  CCATACTGAA CATATCTCGG ATACAGAGAA TTCCACATTT AGCTATTGTC ATAAGCCATA
  ATCCGTGAGA AGACAGATAG ATTGTTCCAG ATCCGTACTG TTTGCTCTGT ACTTTTTGGT
  GAGGCTTAAG AACAAGGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8740307	WI_WGS_19_47711776	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6334295					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47773657 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	1537 bp proximal
Tssr159755	transcription start site region 159755	1889 bp downstream