rs6334335 SNP Detail

Summary

• ID
  rs6334335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135799297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTAGTAGT TTATTGATTT CCTATATTTT
  GACAAAGCAA ATACATGGTG TATCATACAA GGAAACTGGG CCCGTTCAGC ACAAGGTTCT
  CATACAAGAT GGAGCAAGGA CAGTGAGGGC TGGACGGAGG GTCCCAGACG CTGCAGCAAG
  Y
  CCAAAAGTCA AGGAAGACAC AGGGCCTCTG TCCTTTCTCA TTTGGTCCTA AATTGTAACT
  TGTTTTAGAT ATGGAACTAG GAGGCAAATT TGATGAAAAA AACCATGAAG ATAAGTCTGG
  GATACAGAAA GTCCAGCCAG CCCCTTACCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8740347	WI_WGS_1_136736163	WI	MOUSE	f	SNP								T		C
ss45012750	mCV23238888	ABI	CRAMUS_MOUSE	f	SNP	C	C									T
ss49683184	NES12987246	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C		T	T	C		C	T	T	C		T
ss145548832	ENSMUSSNP1908715	ENSEMBL	ENSEMBL_Sanger	f	SNP		C									T
ss319993920	CHEV_1_137768136	CHEVERUD	SCREENING_POP	f	SNP														C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6334335					SNP	C	C	T	T	T	T	T	T	C	C	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683184	NES12987246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135799297 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	1409 bp downstream
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	1816 bp upstream
Tssr13903	transcription start site region 13903	328 bp downstream