rs6334343 SNP Detail

Summary

• ID
  rs6334343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26839920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CATGCGTGTA
  CACATGCACA CACAGCCTGG CCTGCNGCTT TGGCCTTTCA GTAGCCCCGA GAGGTGTTAA
  TTCTTGCTCG TCTCCTTTTT CCCTACTGTT CCTTCACTGG TTCCCTCGGT GAGGTGTGTA
  TGACTTACAG CAGGTGCACA AGCCCAGAAC TCAGTGATCA GTGAGTCTCC CCNTCACAGT
  ATCATCTCAG CTGAGCCAGG ATGCACGAGC CATGACTTCT GCTTTCTAGA AGGTTCTTTT
  R
  CAGCTCCTCC TCCTGCCNTT CTTTAGACTT CTATTGTCCT GGNTTAATTT GCTTCTTATA
  AACTCCACCC AGGACTTCTC CATTTACCCT GATGAGGAAG CTGGGGCTCA GAGGTGAAGC
  ACCTGTCCCA GGTACCTCAT CTTCTAAGTN GCAAAAGGCC CACACGCCTT CTTACCGTAT
  CCTGAGCTGG CTATGGGGTG TCAGGCCAGT AAGAGTCCCT AAGCTGTAGT ATACCCACAA
  AAATGTTCCT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8740355	WI_WGS_17_25805872	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6334343					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26839920 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523901	regulatory region 523901	1959 bp distal
Rr523902	regulatory region 523902	480 bp distal
Rr523903	regulatory region 523903	13 bp proximal
Rr523904	regulatory region 523904	514 bp proximal
Tssr143257	transcription start site region 143257	566 bp upstream