rs6334371 SNP Detail

Summary

• ID
  rs6334371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26839938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTTGCT CGTCTCCTTT
  TTCCCTACTG TTCCTTCACT GGTTCCCTCG GTGAGGTGTG TATGACTTAC AGCAGGTGCA
  CAAGCCCAGA ACTCAGTGAT CAGTGAGTCT CCCCTTCACA GTATCATCTC AGCTGAGCCA
  GGATGCACGA GCCATGACTT CTGCTTTCTA GAAGGTTCTT TTGCAGCTCC TCCTCCTGCC
  R
  TTCTTTAGAC TTCTATTGTC CTGGGTTAAT TTGCTTCTTA TAAACTCCAC CCAGGACTTC
  TCCATTTACC CTGATGAGGA AGCTGGGGCT CAGAGGTGAA GCACCTGTCC CAGGTACCTC
  ATCTTCTAAG TGGCAAAAGG CCCACACGCC TTCTTACCGT ATCCTGAGCT GGCTATGGGG
  TGTCAGGCCA GTAAGAGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8740384	WI_WGS_17_25805890	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6334371					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26839938 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523901	regulatory region 523901	1977 bp distal
Rr523902	regulatory region 523902	498 bp distal
Rr523903	regulatory region 523903	within coordinates
Rr523904	regulatory region 523904	496 bp proximal
Tssr143257	transcription start site region 143257	548 bp upstream