rs6334559 SNP Detail

Summary

• ID
  rs6334559
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7298157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGTAAAC ACCCGCCCGC
  CGCGCTGGAA GCCCCAGCCT GGGAGGAAAC ACTGAGTGAC TCCAGCCTCT AGTCGCTGCT
  GCTCAGAACC CAGAGCCCTG CATCTTGAAA ACACCAGGAT TCTTCCAGCA GCCTGCAGAG
  CCCTAGGGCT CATGCCAGCT CAGTCTAGGT ACTTGGGAGC AGCTTTGGAA ATGGAAGAGA
  S
  GGCACTCAGA AAAGAGACAT TAGAATATCC TGTGATGTTT CACGGGCATA TTTTCTCACA
  GGCATATGTT TCTCCAGACA AGCATAATCT AAGTACTGAA TCTATCGAAA CCCTCAAAAA
  TTGCAACCAC TCTCTCTTAG GATATTTGAG GCTTGCAGCT TTATATTCTT AAAGTAACTG
  TTGTAAAACT CAAACTCGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8740572	WI_WGS_18_7157714	WI	MOUSE	f	SNP							G		C
ss48393862	NES12224707	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C		G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6334559					SNP	G	G	G	G	G	G	G	C	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48393862	NES12224707	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7298157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9684	CpG island 9684	113 bp distal
Gm58896	predicted gene, 58896	within coordinates
Odad2	outer dynein arm docking complex subunit 2	221 bp upstream
Tssr152370	transcription start site region 152370	1085 bp upstream