rs6334710 SNP Detail

Summary

• ID
  rs6334710
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127573682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACCCAA AAAAAACCAA
  AAAACAAAAA ACCAACCCTT TTGTAGCCGT TGGAAGCTTC ATGTCCTTTC TTCTAACTTG
  TCTTCTCCAG CGGAAGTGAC CGCGGTGGCT TCAATAAATT TGGTGGTAAG TGAACAGAGT
  TTCCAAAATT CCCAACTCCC AGCAATGCTT TGTCTGATTG TTCATTTGCA GATGTCTTAG
  M
  GTGTTAAGTG TCAAAGGTTT CTAAAGTGTC TGTAGCCACC TCCAGAAGGG GTGGGGTAGA
  ATGCCTCCTG CTGCCAGATG TGTGCTAACT GGAGGCCAGC AGGGATAAGC TCTTGGCAGT
  CTGCTATGTT ACTAAATTGG TTTTACACAA GTTAATAGTA TTATTTAGTA GGCCTCTTGG
  TGGGTGTTGC CACATCTAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8740723	WI_WGS_7_117836319	WI	MOUSE	f	SNP							C		A
ss47266810	NES11556379	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	C		C		C	C	A	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6334710					SNP	A	C	C	C	A	C	C	C	A	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47266810	NES11556379	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127573682 () rs orientation: forward

Symbol	Name	Function Class
Fus	fused in sarcoma	within coordinates
Tssr69329	transcription start site region 69329	881 bp downstream
Tssr69330	transcription start site region 69330	103 bp downstream