rs6335053 SNP Detail

Summary

• ID
  rs6335053
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7298253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCATCTT GAAAACACCA
  GGATTCTTCC AGCAGCCTGC AGAGCCCTAG GGCTCATGCC AGCTCAGTCT AGGTACTTGG
  GAGCAGCTTT GGAAATGGAA GAGAGGGCAC TCAGAAAAGA GACATTAGAA TATCCTGTGA
  TGTTTCACGG GCATATTTTC TCACAGGCAT ATGTTTCTCC AGACAAGCAT AATCTAAGTA
  S
  TGAATCTATC GAAACCCTCA AAAATTGCAA CCACTCTCTC TTAGGATATT TGAGGCTTGC
  AGCTTTATAT TCTTAAAGTA ACTGTTGTAA AACTCAAACT CGCAAGCCTT CTGCAGCAAA
  ACTTCAATGA AATGAAAACC TCTCTTCCAT CTGTAAAATG AGTATTGCCA TTGTTCATTA
  AAATACACCT TTCTAAAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8741068	WI_WGS_18_7157810	WI	MOUSE	f	SNP							C		G
ss48393861	NES12224708	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6335053					SNP	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48393861	NES12224708	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7298253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9684	CpG island 9684	209 bp distal
Gm58896	predicted gene, 58896	within coordinates
Odad2	outer dynein arm docking complex subunit 2	317 bp upstream
Tssr152370	transcription start site region 152370	1181 bp upstream