rs6335286 SNP Detail

Summary

• ID
  rs6335286
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135799445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGTATCATAC
  AAGGAAACTG GGCCCGTTCA GCACAAGGTT CTCATACAAG ATGGAGCAAG GACAGTGAGG
  GCTGGACGGA GGGTCCCAGA CGCTGCAGCA AGNCCAAAAG TCAAGGAAGA CACAGGGCCT
  CTGTCCTTTC TCATTTGGTC CTAAATTGTA ACTTGTTTTA GATATGGAAC TAGGAGGCAA
  ATTTGATGAA AAAAACCATG AAGATAAGTC TGGGATACAG AAAGTCCAGC CAGCCCCTTA
  M
  CTCCTGCTTC TAGGAATTTA TTCATAAGTC CCTTTAATTT TTCCCTGGAA TGACAGGCAC
  ATGTTGGGCC CAGCCCATCT GGCCAGCTTG AGATCATGGA AGAAGTTCCC ACAATTGAGC
  CTGACCTCTG GGTATCTTAA GACCTGCTTC ATCACCAAAG CAAATGGTGA ACCTACCCAA
  CCTTCCTCCC AGGGAAAAGA AAACTGAGTC CGAGGGCTGC AGGAAGTGAG GANGATACTG
  GGGGGTTGGG                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8741303	WI_WGS_1_136736311	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6335286					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135799445 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	1557 bp downstream
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	1668 bp upstream
Tssr13903	transcription start site region 13903	180 bp downstream