rs6335596 SNP Detail

Summary

• ID
  rs6335596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:37919368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAG GCTTTGGGAT ATGGAGAATC
  Y
  TGATAATGGG GTTCACTATA CCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8741616	WI_WGS_7_28751387	WI	MOUSE	f	SNP		C	T
ss148901612	ENSMUSSNP4198274	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6335596					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:37919368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18905	CpG island 18905	1512 bp proximal
Plekhf1	pleckstrin homology domain containing, family F (with FYVE domain) member 1	710 bp downstream
Rr645765	regulatory region 645765	1742 bp distal