rs6335733 SNP Detail

Summary

• ID
  rs6335733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86235430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG CGCTCCACCA TGGGCCCAGC
  R
  GCTCCGATCC AAGTCCTAGG GTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss8741753	WI_WGS_1_86707808	WI	MOUSE	f	SNP				A		G
ss45165372	mCV22889902	ABI	CRAMUS_MOUSE	f	SNP	G	G		A			A
ss49436579	NES12847849	PERLEGEN	MM_PANEL2	f	SNP		G	G		G		A	G	G	G	A
ss144875404	ENSMUSSNP2677170	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs6335733					SNP	G	G	G	A	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49436579	NES12847849	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86235430 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	403 bp downstream
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	311 bp proximal
Tssr7739	transcription start site region 7739	906 bp downstream
Tssr7740	transcription start site region 7740	847 bp upstream
Tssr12766	transcription start site region 12766	686 bp downstream