rs6336049 SNP Detail

Summary

• ID
  rs6336049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:37919397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATG GGGTTCACTA TACCAGAAAT
  Y
  GGAGGGGAGT TTTCCTAGCA CCAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8742070	WI_WGS_7_28751416	WI	MOUSE	f	SNP			T	C
ss148901617	ENSMUSSNP5768571	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C			T
ss322180560	CHEV_7_39004992	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6336049					SNP	T	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:37919397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18905	CpG island 18905	1483 bp proximal
Plekhf1	pleckstrin homology domain containing, family F (with FYVE domain) member 1	mRNA-UTR
Rr645765	regulatory region 645765	1771 bp distal