rs6336242 SNP Detail

Summary

• ID
  rs6336242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGATGT TATTATCCAC
  AAAACTCGTT GGAACCCTCT CCTGACATAA TTCAGGCATG AAGGAGCACT GCAGAACACA
  AACGGATTTC TCTGCCGTGC TGCCTTTACT GTGGAGCGTG AAGTGAGGGG CTGCAGAGAG
  GAGCCTGCCG GGGCACAGCA GGGAAGGGTG ACACCATCCG TCCTCGAATC TATTGTCAGC
  R
  TCACCCGGGA GGCAGTGGAT GACACAGCAG TTTTGATATG GAAAAACTAA CCTCACAAGA
  AATCAAAGAG CTAACTCTGC CGCGAAGGCG TCTTTGCTGA TCCCCTCTGC CTCTCTGACG
  CTCTTCCGCA CTTCCGGGGA ACTTCATCTA AATCTCTAAG GGCCTTTCTA AGAATGGATG
  ATGACACCGC GGGCCCCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8742263	WI_WGS_5_147509891	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6336242					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491645 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	974 bp upstream
Cpgi17076	CpG island 17076	1688 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	910 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr378793	regulatory region 378793	1553 bp upstream
Rr625195	regulatory region 625195	1556 bp distal
Rr625197	regulatory region 625197	984 bp distal
Rr625198	regulatory region 625198	680 bp distal
Rr625199	regulatory region 625199	within coordinates
Rr625200	regulatory region 625200	1699 bp proximal
Tssr54577	transcription start site region 54577	1992 bp upstream
Tssr54578	transcription start site region 54578	954 bp upstream
Tssr54579	transcription start site region 54579	810 bp upstream