rs6336326 SNP Detail

Summary

• ID
  rs6336326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16195671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTTGAAG CCCCAGCCTG
  TAGCACCTTA ATCTTGAAGA ATATCAGTTA CTTCCTCCCT ACATCCCCAC CTTCCTGCAG
  AGTTCAGGTT TTATAGGCTG GGGGATGCAC AGCTACCTTT AAGAATACAT TGAGTCACAG
  CACTGAAAGT GCTGGGGTCC ACATGAAAAT TCCACAGCTC CATGGGCAGC AGAGGAGTGA
  Y
  ACAATTCAAA AACAAACAAA GCAGGGCTTG GGATGTGGGA GAATCATCAG CTACAGTGAT
  GTGAGCGCAG TCTTTCCCTA ACAAACATCT TCCGTCCCCC CCCCCCCCAA TTCTGCTTCC
  TAGTTTGCCT GCCTTATCAA TGCTTTTCAC AAGGGACAAA TGACAAGTGA CTTGCAACAG
  GGAGGAAAAA GAGACTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8742348	WI_WGS_13_15446044	WI	MOUSE	f	SNP							T		C
ss52620125	NES15517432	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T		T		T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6336326					SNP	T	T	C	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620125	NES15517432	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16195671 () rs orientation: forward

Symbol	Name	Function Class
Inhba	inhibin beta-A	within coordinates
Tssr118445	transcription start site region 118445	1151 bp downstream
Tssr118446	transcription start site region 118446	587 bp upstream