rs6336428 SNP Detail

Summary

• ID
  rs6336428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135799678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCTTGAG ATCATGGAAG AAGTTCCCAC
  AATTGAGCCT GACCTCTGGG TATCTTAAGA CCTGCTTCAT CACCAAAGCA AATGGTGAAC
  CTACCCAACC TTCCTCCCAG GGAAAAGAAA ACTGAGTCCG AGGGCTGCAG GAAGTGAGGA
  Y
  GATACTGGGG GGTTGGGTGG GAACGTCATT CTTGAGGGCC TACAGCAGTC TCCCTTGTTG
  ACTTGAACGT TCTACATGAT TTTCTCAAAT TGACTGAGTA AGTGGATAGT CCCTGAAGCC
  CAGGACCTGG GTATCCTTTC TTGGGCGAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss8742450	WI_WGS_1_136736544	WI	MOUSE	f	SNP									T									C
ss16373323	01.136.199	TWGNF	TWGNF-Mouse-2	f	SNP		C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	C	T	T	C	C	C	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T
ss45197189	mCV23238883	ABI	CRAMUS_MOUSE	f	SNP	C	C	T						T											T
ss145548840	ENSMUSSNP3668539	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T																	T
ss319993922	CHEV_1_137768517	CHEVERUD	SCREENING_POP	f	SNP																									C																	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs6336428					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	C	T	T	C	C	C	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135799678 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	1790 bp downstream
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	1435 bp upstream
Tssr13903	transcription start site region 13903	51 bp upstream