rs6336550 SNP Detail

Summary

• ID
  rs6336550
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:3716313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACACCC AAACTGGACA
  CGTGATGTAA CCTCATACTT ACATGCTCTG GAATGCGGCC TCTCTGCTTG GGATCAGTGC
  TTTTTGTGCA AATCTGCCTA ATTTTCCCAC CACAGCCCTT TGCTTTAAGA ATGCTCTTTG
  TGTGCCCCTT ACTTGCTATA AGTAGTAAAC CTCTTTTCTC TCTTTTATGA CCTAGTTGGA
  M
  CTTTGCTGTC AACCTGCTAC AATGAGTTAG AGTGAGATAA CCCCAAAACA AATACATGTT
  TCTCAAAGTC CAGTCCTCAC TGTCCCTCAA GATCAAGTAC ACATTTTTCT ACATTTTTCT
  GGAAAGTGCC TACATGAATA GCAAAAGATA ACCCTGACAT CTTTGTTACC TATGTCAGTT
  TTCTTTAAGA AGAATCTAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8742572	WI_WGS_1_3647593	WI	MOUSE	f	SNP							C		A
ss51223091	NES14299594	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6336550					SNP	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51223091	NES14299594	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:3716313 () rs orientation: forward

Symbol	Name	Function Class
Gm19938	predicted gene, 19938	1219 bp downstream
Xkr4	X-linked Kx blood group related 4	within coordinates