rs6336823 SNP Detail

Summary

• ID
  rs6336823
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050567 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GTTTTTCATT GATTTCGTCA TTTTTCGTAT CGTCAAGTGG ATGTTTCTCC TTTTTCATTA
  TTTTCAGTTT TCTTGCCATA TTCCATGTCC AACAGTGGAC ATTTCTAAAT TTTCCACCTT
  TTTCAGTTTT CCTCGCCATC TTTCACGTCC TAAAGTTTGT ATTTCTCATT TTTCGTGATT
  TTCAGTTATC TCGCTATATT CCAGATCCTA AAGGGTGTAT TTCTAATTTT TCACGTTTTT
  CAGTGATTTC ATCATTTTTC GTATCGTCAA GTGGATGTTT GTCATTTTCA ATGATTTTCA
  N
  TTTTCTTGCC ATATTCCATG TCCTACAGTG TACATTTATA AATTTTCCAA CTTTTTCAGT
  TTTCCTCGCC ATATTTCACG TCCTAAAGTG TGTATTTCTC ATTTTCCGTG AATTTCAGGT
  TTCTCGCCAT ATTCCAGGTC CTACAGTGTG CATTTCTCAT GTTTCACGTT TTTCAGTGAT
  TTCGTCATTT TTCAAGTCTT CAAGTGGTTG TTTCTCATTT TACATGATTT TCAGTTTTCT
  TGCCATCTTC CATGTCCTAC AGTGGACATT TCTAAATTTT CCACCTTTTT CAGTTTTCCT
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss8742847	WI_WGS_15_80978493	WI	MOUSE	f	SNP				A	G
ss46419884	mCV22805738	ABI	CRAMUS_MOUSE	r	SNP		C				T
ss46422415	mCV25362201	ABI	CRAMUS_MOUSE	r	SNP		C	A
ss46427453	mCV22815853	ABI	CRAMUS_MOUSE	r	SNP					T	C
ss46428235	mCV25358687	ABI	CRAMUS_MOUSE	f	SNP		G	C			C
ss46435777	mCV23011963	ABI	CRAMUS_MOUSE	f	SNP	C					G
ss46441709	mCV22987072	ABI	CRAMUS_MOUSE	f	SNP					G	T
ss46447742	mCV25360002	ABI	CRAMUS_MOUSE	f	SNP		G				C
ss46451508	mCV25357659	ABI	CRAMUS_MOUSE	f	SNP		G	G		C
ss46453328	mCV22562304	ABI	CRAMUS_MOUSE	f	SNP	C					G
ss46455240	mCV22781258	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss46455341	mCV25390921	ABI	CRAMUS_MOUSE	r	SNP		A	C
ss46459632	mCV23008343	ABI	CRAMUS_MOUSE	f	SNP		A				G
ss46460628	mCV25355802	ABI	CRAMUS_MOUSE	f	SNP					G	C
ss46461939	mCV22985217	ABI	CRAMUS_MOUSE	r	SNP	T		C
ss46468399	mCV25361675	ABI	CRAMUS_MOUSE	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs6336823					SNP	C	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050567 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1759 bp downstream
Tssr4285	transcription start site region 4285	1734 bp upstream
Tssr4286	transcription start site region 4286	1630 bp downstream
Tssr4287	transcription start site region 4287	1595 bp upstream
Tssr4288	transcription start site region 4288	1567 bp downstream
Tssr4289	transcription start site region 4289	1472 bp upstream
Tssr4290	transcription start site region 4290	1465 bp downstream
Tssr4291	transcription start site region 4291	1385 bp upstream
Tssr4292	transcription start site region 4292	1349 bp downstream
Tssr4293	transcription start site region 4293	1314 bp upstream
Tssr4294	transcription start site region 4294	1312 bp downstream
Tssr4295	transcription start site region 4295	1239 bp upstream
Tssr4296	transcription start site region 4296	1276 bp downstream
Tssr4297	transcription start site region 4297	1212 bp upstream
Tssr4298	transcription start site region 4298	1194 bp downstream
Tssr4299	transcription start site region 4299	1154 bp downstream
Tssr4300	transcription start site region 4300	1116 bp downstream
Tssr4301	transcription start site region 4301	1098 bp upstream
Tssr4302	transcription start site region 4302	1086 bp upstream
Tssr4303	transcription start site region 4303	1031 bp downstream
Tssr4304	transcription start site region 4304	1002 bp upstream
Tssr4305	transcription start site region 4305	933 bp downstream
Tssr4306	transcription start site region 4306	914 bp upstream
Tssr4307	transcription start site region 4307	893 bp downstream
Tssr4308	transcription start site region 4308	861 bp upstream
Tssr4309	transcription start site region 4309	817 bp upstream
Tssr4310	transcription start site region 4310	770 bp downstream
Tssr4311	transcription start site region 4311	742 bp upstream
Tssr4312	transcription start site region 4312	662 bp downstream
Tssr4313	transcription start site region 4313	603 bp upstream
Tssr4314	transcription start site region 4314	591 bp downstream
Tssr4315	transcription start site region 4315	567 bp downstream
Tssr4316	transcription start site region 4316	540 bp upstream
Tssr4317	transcription start site region 4317	464 bp downstream
Tssr4318	transcription start site region 4318	440 bp upstream
Tssr4319	transcription start site region 4319	383 bp upstream
Tssr4320	transcription start site region 4320	319 bp downstream
Tssr4321	transcription start site region 4321	291 bp upstream
Tssr4322	transcription start site region 4322	192 bp downstream
Tssr4323	transcription start site region 4323	157 bp upstream
Tssr4324	transcription start site region 4324	127 bp downstream
Tssr4325	transcription start site region 4325	76 bp downstream
Tssr4326	transcription start site region 4326	38 bp upstream
Tssr4327	transcription start site region 4327	35 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	13 bp downstream
Tssr4330	transcription start site region 4330	148 bp upstream
Tssr4331	transcription start site region 4331	172 bp downstream
Tssr4332	transcription start site region 4332	278 bp downstream
Tssr4333	transcription start site region 4333	290 bp upstream
Tssr4334	transcription start site region 4334	312 bp downstream
Tssr4335	transcription start site region 4335	459 bp downstream
Tssr4336	transcription start site region 4336	463 bp upstream
Tssr4337	transcription start site region 4337	536 bp downstream