rs6337559 SNP Detail

Summary

• ID
  rs6337559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:3716420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACAGCC CTTTGCTTTA
  AGAATGCTCT TTGTGTGCCC CTTACTTGCT ATAAGTAGTA AACCTCTTTT CTCTCTTTTA
  TGACCTAGTT GGACCTTTGC TGTCAACCTG CTACAATGAG TTAGAGTGAG ATAACCCCAA
  AACAAATACA TGTTTCTCAA AGTCCAGTCC TCACTGTCCC TCAAGATCAA GTACACATTT
  Y
  TCTACATTTT TCTGGAAAGT GCCTACATGA ATAGCAAAAG ATAACCCTGA CATCTTTGTT
  ACCTATGTCA GTTTTCTTTA AGAAGAATCT AGGAGGCCAT CAAGTTGTTG CTCTGGTCAA
  AGAGGTGAGG TATCATCTAC CTAGTTCATC ACCCAGATGA TATCTCCAGG CCTGTATTTA
  CTTAGTTGGC ATCTTTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8743583	WI_WGS_1_3647700	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6337559					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:3716420 () rs orientation: forward

Symbol	Name	Function Class
Gm19938	predicted gene, 19938	1112 bp downstream
Xkr4	X-linked Kx blood group related 4	within coordinates