rs6338164 SNP Detail

Summary

• ID
  rs6338164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:3716542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTCTTTTATG
  ACCTAGTTGG ANCTTTGCTG TCAACCTGNT ACAATGAGTT AGAGTGAGAT AACCCCAAAA
  CAAATACATG TTTCTCAAAG TCCAGTCCTC ACTGTCCCTC AAGATCAAGT ACACANTTNT
  CTACATTTTT CTGGAAAGTN CCTACATGAA TAGCAAAAGA TAACCCTGAC ATCTTTGTTA
  CCTATGTCAG TTTTCTTTAA GAAGAATCTA GGAGGCCATC AAGTTGTTGC TCTGGTCAAA
  R
  AGGTGAGGNA TCATCTACCT AGTTCATCAC CCAGATGATA TCTCCAGGCC TGTATTTACT
  TAGTTGGCAT CTTTTTTATG TAGTAACTTG ACAAGGTTGA AATAAGTGGT NGATGCATCC
  AGTCACCCAA GACAGCCTTA AAACTCTTCT CTTTGTTACA AAGACACATG ATGCCCTCAT
  AAAATGAAAT CATGTCTGTT TGCTTCTAAG ACCATTTTTG GACCTTTGGT CAGAGAAGTA
  ACATACTTGA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8744189	WI_WGS_1_3647822	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6338164					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:3716542 () rs orientation: forward

Symbol	Name	Function Class
Gm19938	predicted gene, 19938	990 bp downstream
Xkr4	X-linked Kx blood group related 4	within coordinates