rs6338184 SNP Detail

Summary

• ID
  rs6338184
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:3716551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGCAAAAG ATAACCCTGA CATCTTTGTT ACCTATGTCA
  GTTTTCTTTA AGAAGAATCT AGGAGGCCAT CAAGTTGTTG CTCTGGTCAA AGAGGTGAGG
  K
  ATCATCTACC TAGTTCATCA CCCAGATGAT ATCTCCAGGC CTGTATTTAC TTAGTTGGCA
  TCTTTTTTAT GTAGTAACTT GACAAGGTTG AAATAAGTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8744209	WI_WGS_1_3647831	WI	MOUSE	f	SNP			T	G
ss45051849	mCV24040882	ABI	CRAMUS_MOUSE	f	SNP	T	T	T		G
ss148459212	ENSMUSSNP6830558	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6338184					SNP	T	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:3716551 () rs orientation: forward

Symbol	Name	Function Class
Gm19938	predicted gene, 19938	981 bp downstream
Xkr4	X-linked Kx blood group related 4	within coordinates