rs6338290 SNP Detail

Summary

• ID
  rs6338290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:175173929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA GGATCATCAC ACAAAGGGGT
  Y
  AGAGCCCAGG CTCTCCTGCC TCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8744315	WI_WGS_1_176659838	WI	MOUSE	f	SNP			T	C
ss146316491	ENSMUSSNP1759781	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss320149962	CHEV_1_177276494	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6338290					SNP	C	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175173929 () rs orientation: forward

Symbol	Name	Function Class
Rgs7	regulator of G protein signaling 7	Intron
Rr423817	regulatory region 423817	13 bp proximal