rs6338488 SNP Detail

Summary

• ID
  rs6338488
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050570 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                         tccatgattt
  tnanttttct tgccatattc cacgtcctac agtggacatt tctaaatttt ccaccttttt
  cagttttcct cgccatattt cacgtcctaa tttgtgtatt tctcattttc cgtgattttc
  agttttcttg ccatattcca ggtcctacag tgtgcatttc tcatatttca cgtttttcag
  tgatttcgtc atttttcaag tcgtcaagtg gatgtttctc gatttccatg attttcagtt
  B
  tcttgccata ttcctcgtct cacagtggat atttctaaat tttcgacctt tttcagtttt
  cctcgccata ttacacgtcc taaagtgtgt atttctcatt ttccgtgatt ttcagttttc
  tcgccatatt ccaggtcctt cagtgtgcat ttcatatttt taatgttttt cagtgatttt
  gtcatttttc aagtcgtcaa atggatgttt ctcattttcc atggttttca gttttcttgc
  catattccac                                                       
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss8744513	WI_WGS_15_80978730	WI	MOUSE	f	SNP		T	G
ss46451979	mCV22877362	ABI	CRAMUS_MOUSE	r	SNP	A			G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs6338488					SNP	T	T	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050570 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1756 bp downstream
Tssr4285	transcription start site region 4285	1731 bp upstream
Tssr4286	transcription start site region 4286	1627 bp downstream
Tssr4287	transcription start site region 4287	1592 bp upstream
Tssr4288	transcription start site region 4288	1564 bp downstream
Tssr4289	transcription start site region 4289	1469 bp upstream
Tssr4290	transcription start site region 4290	1462 bp downstream
Tssr4291	transcription start site region 4291	1382 bp upstream
Tssr4292	transcription start site region 4292	1346 bp downstream
Tssr4293	transcription start site region 4293	1311 bp upstream
Tssr4294	transcription start site region 4294	1309 bp downstream
Tssr4295	transcription start site region 4295	1236 bp upstream
Tssr4296	transcription start site region 4296	1273 bp downstream
Tssr4297	transcription start site region 4297	1209 bp upstream
Tssr4298	transcription start site region 4298	1191 bp downstream
Tssr4299	transcription start site region 4299	1151 bp downstream
Tssr4300	transcription start site region 4300	1113 bp downstream
Tssr4301	transcription start site region 4301	1095 bp upstream
Tssr4302	transcription start site region 4302	1083 bp upstream
Tssr4303	transcription start site region 4303	1028 bp downstream
Tssr4304	transcription start site region 4304	999 bp upstream
Tssr4305	transcription start site region 4305	930 bp downstream
Tssr4306	transcription start site region 4306	911 bp upstream
Tssr4307	transcription start site region 4307	890 bp downstream
Tssr4308	transcription start site region 4308	858 bp upstream
Tssr4309	transcription start site region 4309	814 bp upstream
Tssr4310	transcription start site region 4310	767 bp downstream
Tssr4311	transcription start site region 4311	739 bp upstream
Tssr4312	transcription start site region 4312	659 bp downstream
Tssr4313	transcription start site region 4313	600 bp upstream
Tssr4314	transcription start site region 4314	588 bp downstream
Tssr4315	transcription start site region 4315	564 bp downstream
Tssr4316	transcription start site region 4316	537 bp upstream
Tssr4317	transcription start site region 4317	461 bp downstream
Tssr4318	transcription start site region 4318	437 bp upstream
Tssr4319	transcription start site region 4319	380 bp upstream
Tssr4320	transcription start site region 4320	316 bp downstream
Tssr4321	transcription start site region 4321	288 bp upstream
Tssr4322	transcription start site region 4322	189 bp downstream
Tssr4323	transcription start site region 4323	154 bp upstream
Tssr4324	transcription start site region 4324	124 bp downstream
Tssr4325	transcription start site region 4325	73 bp downstream
Tssr4326	transcription start site region 4326	35 bp upstream
Tssr4327	transcription start site region 4327	32 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	16 bp downstream
Tssr4330	transcription start site region 4330	151 bp upstream
Tssr4331	transcription start site region 4331	175 bp downstream
Tssr4332	transcription start site region 4332	281 bp downstream
Tssr4333	transcription start site region 4333	293 bp upstream
Tssr4334	transcription start site region 4334	315 bp downstream
Tssr4335	transcription start site region 4335	462 bp downstream
Tssr4336	transcription start site region 4336	466 bp upstream
Tssr4337	transcription start site region 4337	539 bp downstream