rs6340624 SNP Detail

Summary

• ID
  rs6340624
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148514835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGGCGG AGCCTCTGGG
  AGGAAGAGGA GAACAGGAGA GAAACTCTTC TGGCCCGGGA CCGCGACCGG GGCGGAACCC
  GGGACCGAGT CGCCTTGGCG GCGCTGACCG AGATCGAGCA GGTAAGTGAG CGCTCCTGCC
  TGGCCGTCTG GCAACGCCGC GGCACCAGGG ACCTCTTCCC TTTTCTTAGG CTCAATAAGA
  M
  ATGGATGTTG TCCTTTCCTC CACGTGGTGT CTCTGCAACC TGGCATCAGG CTTTTTTATG
  TGCAGAACCG TGGCGGTGAG TTTGCCATAC CCGGAGGAGA GCAGCAGTTT GGGGCCGGGG
  GATGTAAGAA GCGACTCCCA GCTGGAAATG AGGCCCGGGG CACGGCTGCC GTTTCTGAGG
  TCCAACTCCA GGAAACTACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8746656	WI_WGS_2_149708904	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6340624					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148514835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	within coordinates
Gm75182	predicted gene, 75182	1682 bp downstream
Nxt1	NTF2-related export protein 1	within coordinates
Rr397374	regulatory region 397374	227 bp downstream
Rr566945	regulatory region 566945	279 bp distal
Rr566946	regulatory region 566946	409 bp distal
Rr566947	regulatory region 566947	within coordinates
Tssr20647	transcription start site region 20647	193 bp downstream