rs6341260 SNP Detail

Summary

• ID
  rs6341260
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:33785940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGTAATAT TCAGAATTTG
  GAAAAACTAT CCTCGGTCCT ACCTTGTTCT GAGATGCTGA ACTTCCCTTC CAAGACCCAC
  TTTCCTAAGA TGACCAAATA TGTATTTGAA GCAGCAGCAT CAGTGAGCAC AAGTCAAATT
  TCTTAATGTA AAAACTAAAG TACACCTTTC AAGTCAAACT AGTCCATCTT CAAAATTCTC
  W
  GAGCTGAAAC ATCATTATAA ACTTAAGTAG TGGGGCTGGA GGGTTAGAAT AAGCTTAGAT
  TCATACTTAA AGATATATCT AATGATTAAA TACCTTGAAG TGCAAAAAAT TAAAGTGATT
  TTAATTTGGA GTGATAGATC ACAGATCTGT AATTAAGACT AATGTACAAA GGCAATAGCA
  TTCGGAGCGG TAAAATACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8747293	WI_WGS_5_32328289	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6341260					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33785940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15737	CpG island 15737			234 bp proximal
Fam53a	family with sequence similarity 53, member A			Intron
				Noncoding-Transcript-Variant
Gm9903	predicted gene 9903			1329 bp upstream
Rr399034	regulatory region 399034			1042 bp upstream
Rr609574	regulatory region 609574			322 bp distal
Rr609575	regulatory region 609575			111 bp proximal
Rr609576	regulatory region 609576			306 bp proximal
Rr609577	regulatory region 609577			1016 bp proximal
Rr609578	regulatory region 609578			1340 bp proximal
Tssr45824	transcription start site region 45824			1319 bp upstream
Tssr45825	transcription start site region 45825			1353 bp upstream
Tssr50608	transcription start site region 50608			939 bp downstream
Tssr50609	transcription start site region 50609			981 bp downstream