rs6341321 SNP Detail

Summary

• ID
  rs6341321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146236762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATTATCTC AATTCTTCTT CAGTAAACAT
  AAATTTAAGA ATACTCCTAG AAGTTTAGAT TCCTTCTCAA ATCACCATTT CAGAGTTAAT
  GTACCTTGGT AAGCCTATTC CACCTTCTAT TAATGTACTG CAGCTAGTGT ACAGGAAGCA
  Y
  AACATGGAAG TGTATTTGTT ATTATTTTAA ATAAAAGACT CTGTTTCAGA ATTTTGTTCT
  AGTCAAAGCC ATTTTAGCTA CAAAGTTGTA AAGTTCAGCA TCTTCCTAGG AATGATAGAA
  AACTGGCTCA TCTATAGAAC AAAATGACTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8747354	WI_WGS_1_147232978	WI	MOUSE	f	SNP								C		T
ss49693985	NES12971364	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C		T		T	C	T		T	C	T	T		C
ss145656510	ENSMUSSNP2230884	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320018067	CHEV_1_148208154	CHEVERUD	SCREENING_POP	f	SNP														T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6341321					SNP	T	T	C	T	C	T	C	C	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693985	NES12971364	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146236762 () rs orientation: forward

Symbol	Name	Function Class
Rr420039	regulatory region 420039	1105 bp distal