rs6341395 SNP Detail

Summary

• ID
  rs6341395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:97308175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCTCTC TGTAGACCAG
  GCCGGCCTCG AACTCAGAGA TGCATGTGCC TCTGCCTCCC GAGTGCTGGA TTAAAGGCGT
  GCACCACCAC CGCCCGGCAA TGTTAGTGCC TATTTTACAG ATAAGGTCTG ACCTAAAGGT
  ATGGCGATAT TGTTGGGCTG GAACCTGAGT TCTGGTGGTC TTTAGGGCAG GAAATGAAGT
  Y
  GGGGGAAGGG AGCACTGGAG AGACGGCTCA GCAGTTGAGA GCACTGACTG CTCTTCCAAG
  AGGACCTGGG TTCTATTCCC AGCCCCCGCG TGGCAGCTCA CAACTGTCTG TTACTACAGG
  ATCAATCACC CTCACACAGA CACATGCAGG CAAAGCATCA GTGCACATAA AATAAAAATA
  AATAAATTAT AAAAAAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8747428	WI_WGS_11_98178141	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6341395					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97308175 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	Intron
Cpgi3698	CpG island 3698	1067 bp distal
Gm57393	predicted gene, 57393	within coordinates
Rr402912	regulatory region 402912	1848 bp downstream
Rr455766	regulatory region 455766	1317 bp distal
Rr455767	regulatory region 455767	316 bp distal
Rr455768	regulatory region 455768	1006 bp distal
Tssr104623	transcription start site region 104623	1811 bp downstream
Tssr104624	transcription start site region 104624	1773 bp downstream
Tssr104625	transcription start site region 104625	1752 bp downstream