rs6341530 SNP Detail

Summary

• ID
  rs6341530
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:174038138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCTCTG GGCTCAGTGA
  AAGATATATT CTCAAAAACT AAGGGAGAGA GTAACTGAAG AAGGCACCTG ACATCAAGCC
  ATGACCTGTA AATGTATATA CACTCACATG CACACAATCA AGTGTAACAC ATACGATACA
  CACACATCTA GAAAGGAAGT TTAAAGAATG GTGCACTGGG CATCAGAAAA ATTAGGTTTA
  M
  ATCTTGGCTT TACTCTGTGT GTTCTTTGCA AAATTTGCTT CATTTTTAAG GACCTTGGTG
  ATTTGATAAA GCAATCTTGA AATTTCCTTT CAATTAGTAT TTGTGTCCCA TCAAATGGAT
  TATAAAATTC CTACCTACTG GCCCTACCCA AAATTAGATA TTTTGTGTTG AAATTTTAAA
  TGAAACAATT TAACTGAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ	NZW/LacJ
ss8747563	WI_WGS_1_175519100	WI	MOUSE	f	SNP		C		A
ss49530319	NES12832609	PERLEGEN	MM_PANEL2	f	SNP	C		A		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ	NZW/LacJ
rs6341530					SNP	C	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49530319	NES12832609	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174038138 () rs orientation: forward

Symbol	Name	Function Class
Gm71183	predicted gene, 71183	within coordinates
Spta1	spectrin alpha, erythrocytic 1	within coordinates
Tssr10306	transcription start site region 10306	1082 bp upstream