rs6341550 SNP Detail

Summary

• ID
  rs6341550
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:88969712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGATT
  GGAGAAGGCA ATAAGAAGAG GGAGGGTAGG GGGGCGGGCC GCCGGGGGCG CCCAAAGCCA
  GCTAGGCTCA GTCTCACACG CGCGCCGCCA CTGTTTGTAC ACAGTGCGCT CCTGGCCTCA
  GGCTCGCTCC CCTCCAGCTC TCGCTTCATT GTTCTCCAAG TCAGAAGCCC CCGCAGCCGC
  S
  GCGGCAGCAG CGTGAGCCGT AGTCACTGCT GGCCGCTTCG CCTGCGGTGC GCGCACGGAA
  ATCGGGGAGC CAGGAACCCA AGGAGCCCGC GCTCCGCCCG CTGTGCCTCT GCTAGGACCC
  ACTCGCAGCC CCAGCCTCTC TCAAGCGCAC CCACCTCCGC GCACCCCAGC TCAGGCGAAG
  CTGGAGTGAG GGGTGAATCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8747583	WI_WGS_13_85955007	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6341550					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88969712 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5919	CpG island 5919			within coordinates
Edil3	EGF-like repeats and discoidin I-like domains 3			mRNA-UTR
				Noncoding-Transcript-Variant
Rr483401	regulatory region 483401			within coordinates
Rr483402	regulatory region 483402			313 bp distal
Tssr120562	transcription start site region 120562			73 bp downstream
Tssr120563	transcription start site region 120563			13 bp downstream
Tssr120564	transcription start site region 120564			2 bp downstream
Tssr120565	transcription start site region 120565			1 bp upstream
Tssr120566	transcription start site region 120566			13 bp upstream
Tssr120567	transcription start site region 120567			76 bp upstream
Tssr120568	transcription start site region 120568			86 bp upstream
Tssr120569	transcription start site region 120569			115 bp upstream
Tssr120570	transcription start site region 120570			139 bp upstream
Tssr120571	transcription start site region 120571			157 bp upstream
Tssr120572	transcription start site region 120572			289 bp upstream
Tssr120573	transcription start site region 120573			323 bp upstream
Tssr120574	transcription start site region 120574			350 bp upstream
Tssr120575	transcription start site region 120575			1998 bp upstream
Tssr123374	transcription start site region 123374			181 bp downstream