rs6341785 SNP Detail

Summary

• ID
  rs6341785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:33786034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATATGTA TTTGAAGCAG
  CAGCATCAGT GAGCACAAGT CAAATTTCTT AATGTAAAAA CTAAAGTACA CCTTTCAAGT
  CAAACTAGTC CATCTTCAAA ATTCTCAGAG CTGAAACATC ATTATAAACT TAAGTAGTGG
  GGCTGGAGGG TTAGAATAAG CTTAGATTCA TACTTAAAGA TATATCTAAT GATTAAATAC
  Y
  TTGAAGTGCA AAAAATTAAA GTGATTTTAA TTTGGAGTGA TAGATCACAG ATCTGTAATT
  AAGACTAATG TACAAAGGCA ATAGCATTCG GAGCGGTAAA ATACATTGTG AACATCGCAC
  ATCCCATCCT CCACACAGGA AGTCTTAAAG GGACTTACAC ACCCTCAGTC TACGCAGGAA
  AGTGGCTTCG GAATAGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8747818	WI_WGS_5_32328383	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6341785					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33786034 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15737	CpG island 15737			140 bp proximal
Fam53a	family with sequence similarity 53, member A			Intron
				Noncoding-Transcript-Variant
Gm9903	predicted gene 9903			1235 bp upstream
Rr399034	regulatory region 399034			948 bp upstream
Rr609574	regulatory region 609574			416 bp distal
Rr609575	regulatory region 609575			17 bp proximal
Rr609576	regulatory region 609576			212 bp proximal
Rr609577	regulatory region 609577			922 bp proximal
Rr609578	regulatory region 609578			1246 bp proximal
Tssr45824	transcription start site region 45824			1225 bp upstream
Tssr45825	transcription start site region 45825			1259 bp upstream
Tssr50608	transcription start site region 50608			845 bp downstream
Tssr50609	transcription start site region 50609			887 bp downstream