rs6341928 SNP Detail

Summary

• ID
  rs6341928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95720315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT TTCATTGTGC CCCAATACTC
  R
  CTCCCTTTGC ATCCCCAGCT GTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8747961	WI_WGS_11_96590483	WI	MOUSE	f	SNP			A	G
ss38853511	mCV23213452	ABI	CRAMUS_MOUSE	f	SNP	A	G	A		A
ss132668216	ENSMUSSNP3501423	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6341928					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95720315 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	585 bp downstream
Cpgi3603	CpG island 3603	722 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr455200	regulatory region 455200	1006 bp distal
Rr455201	regulatory region 455201	1782 bp distal
Rr455202	regulatory region 455202	1192 bp proximal
Tssr3654	transcription start site region 3654	1033 bp upstream
Tssr104394	transcription start site region 104394	1264 bp upstream
Tssr104395	transcription start site region 104395	1835 bp upstream
Tssr104396	transcription start site region 104396	1872 bp upstream