rs6341963 SNP Detail

Summary

• ID
  rs6341963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTGGCAACAC
  TGGGAGCGGG GNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NCCCCCTCTC
  CCCCTTCTCA ccccccccgc ctcgcngcgc ggcggcccgg cggccagggc gcccccAGGT
  CTGGCCCGTC GCCACACGGC GGCGGGCGTG GCGAGGGCGG CCCCAGACAG CCGGCTGAGC
  R
  ACTCGAGGAA GGAAGGAGGG CGGCGGGGGT GGGGCCGAGG GAACATCCTG TCTGAGCCGG
  GCACCGCAGA CAGCGCCGTG CGCCAGCCGC CCAGACGGCG CGCCGGGNCA GCAGCGCGGG
  GTACGCGCGA GGGGGGCGGG GGAGCGGGAG CACGCGCGTG CGCGGCCGAG GCGCCAGGCG
  CGCGCCCCGG TCGGGGCTGG GGACGCGCGC GCAGCCTGCA GTGTGCAGCC CGCCGGGAGC
  CACAATAGGC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8747996	WI_WGS_3_30912630	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6341963					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	631 bp downstream
Rr397631	regulatory region 397631	815 bp downstream
Skil	SKI-like	478 bp upstream
Tssr28706	transcription start site region 28706	725 bp downstream
Tssr28707	transcription start site region 28707	582 bp downstream
Tssr28708	transcription start site region 28708	34 bp upstream
Tssr28709	transcription start site region 28709	62 bp upstream
Tssr28710	transcription start site region 28710	87 bp upstream
Tssr28711	transcription start site region 28711	305 bp upstream
Tssr28712	transcription start site region 28712	329 bp upstream
Tssr28713	transcription start site region 28713	420 bp upstream
Tssr28714	transcription start site region 28714	1265 bp upstream
Tssr28715	transcription start site region 28715	1742 bp upstream
Tssr32911	transcription start site region 32911	1195 bp downstream