rs6342099 SNP Detail

Summary

• ID
  rs6342099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122872369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCACTAG GTCAGAAGAG
  TCAGCCAGTA TCCAGAAAGA ATGCACTGGG CGGCTGTCAA CTCTGGTCCC AGGCTGTGTT
  TTTCAGCATC CAGAGCAGTC CCACAGTGGA CACCCTGCTC TGCCCATCAT CCTAGGAAGG
  GCTGAGTAAG ACCAGCAACT CAGCCATTCA TCTATTTTAG AGGTTCTCAG CCTTCCTAAC
  K
  CCACGGCCCT TTAATACAGT TCCTCGTGTT GTGGTGACCC CCAACCGTAA AATTATTTCC
  ATTGCTACTG TTTGCTACTG TTATGGCTGA TAATGTAAAT CTCTGTGTCT TCCAGTGGTC
  TTATGTGACC CCTGTGGAAG GGTCATTCAA CACCCAGAGG CTGAGAACAG CTGACGTTCG
  TGCTGTGGAA TTGACCCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8748132	WI_WGS_8_122216461	WI	MOUSE	f	SNP	T	G
ss322848697	CHEV_8_124669530	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6342099					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122872369 () rs orientation: forward

Symbol	Name	Function Class
Gm39268	predicted gene, 39268	132 bp downstream
Gm56875	predicted gene, 56875	within coordinates
Rr174877	regulatory region 174877	1969 bp distal
Rr179926	regulatory region 179926	832 bp proximal
Rr179927	regulatory region 179927	1832 bp proximal
Rr188324	regulatory region 188324	within coordinates