rs6342271 SNP Detail

Summary

• ID
  rs6342271
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85872322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCATCCCT GAAGGTTTTA
  ACTTAAAAGA CTCTCAAGCA TTTTTGGGTA AGGTCGAGAA GTTCCTTTAG GAATCACCCG
  AAAAGAATCA TTGAGGTTGT TTGGTATTAC TCATTTCTGC TGAAGATGTG TAGGGTCGGG
  GTTAGTCACT GTTGCTGCTT GCTGCAGTTG CTTTGTTTTT GAGAGTCTTA TTGTATAAGT
  M
  AATGCACAGA CCAGCAAAAG CTTGGAGAAT TGCCACGAAT TGATTATCTT TGAGTAGTGA
  CATTAAGGTT AAGCGTTTTC CCTAAACGTT TCTATTTTCT CTATAACGAA CATGAAACTT
  TTTCTCTATG GAAAGTGTTT GAAGTTAGAA GCCTGGGAAT TGGAGATTTC CTAATTTTAT
  GTGTCTACTT GATATCCGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8748304	WI_WGS_12_80526911	WI	MOUSE	f	SNP							C		A
ss52451568	NES15428286	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6342271					SNP	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451568	NES15428286	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85872322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	198 bp distal
Erg28	ergosterol biosynthesis 28	998 bp upstream
Tssr114435	transcription start site region 114435	900 bp downstream
Tssr114436	transcription start site region 114436	539 bp downstream
Tssr117107	transcription start site region 117107	1043 bp upstream
Tssr117108	transcription start site region 117108	993 bp upstream
Tssr117109	transcription start site region 117109	979 bp upstream
Tssr117110	transcription start site region 117110	659 bp upstream
Ttll5	tubulin tyrosine ligase-like family, member 5	within coordinates