rs6342372 SNP Detail

Summary

• ID
  rs6342372
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85872388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGAATCA CCCGAAAAGA
  ATCATTGAGG TTGTTTGGTA TTACTCATTT CTGCTGAAGA TGTGTAGGGT CGGGGTTAGT
  CACTGTTGCT GCTTGCTGCA GTTGCTTTGT TTTTGAGAGT CTTATTGTAT AAGTCAATGC
  ACAGACCAGC AAAAGCTTGG AGAATTGCCA CGAATTGATT ATCTTTGAGT AGTGACATTA
  W
  GGTTAAGCGT TTTCCCTAAA CGTTTCTATT TTCTCTATAA CGAACATGAA ACTTTTTCTC
  TATGGAAAGT GTTTGAAGTT AGAAGCCTGG GAATTGGAGA TTTCCTAATT TTATGTGTCT
  ACTTGATATC CGGATTAAAA TGTGTGATTA AAAAAAAAAG TACCAATAAT TAGAGTATTT
  GACTTCCCCT TTCCCCGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8748407	WI_WGS_12_80526977	WI	MOUSE	f	SNP							A		T
ss52451567	NES15428287	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6342372					SNP	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451567	NES15428287	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85872388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	264 bp distal
Erg28	ergosterol biosynthesis 28	1064 bp upstream
Rr265708	regulatory region 265708	within coordinates
Tssr114435	transcription start site region 114435	966 bp downstream
Tssr114436	transcription start site region 114436	605 bp downstream
Tssr117107	transcription start site region 117107	1109 bp upstream
Tssr117108	transcription start site region 117108	1059 bp upstream
Tssr117109	transcription start site region 117109	1045 bp upstream
Tssr117110	transcription start site region 117110	725 bp upstream
Ttll5	tubulin tyrosine ligase-like family, member 5	within coordinates