rs6342442 SNP Detail

Summary

• ID
  rs6342442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21320652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAACAGG GGACGACTGG
  AGACTCCGGA AAAGGTAAAA CCAGACGAAC TTAAATTTCA TCAATGGAGA GGCGGACCTA
  GAGCCGCTTC ACCGCCCTCC GGTCTCCACG CCCTCTAGGG CAGGACTGCC GCAGGCCCCC
  GGCCGCACCC CGAGGCCCCT CGCCGGCGGC CGTCCAGCGG CGAGCTGCTG GCGCCCCGTG
  Y
  AGATCGGGAG GCGGGGAGGC CGGCGAAGGG GCAACGCAAC CTTTTCTCCA GCCCATAAAT
  AGCCGGGACT CGGAGATGCT GCGAATTCCG CACTCGGGCA GACAGCTGCC CGCGGCCTCC
  ACTGGCCGCC CTCCCCTACG CAGCCGCTCC ACACCAGGGC CCGGCTCGCC CCCTCCCTGC
  CCCCCGGGCC TGGCCGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	MSM/Ms
ss8748477	WI_WGS_11_21388785	WI	MOUSE	f	SNP	T	C
ss131782963	ENSMUSSNP5730048	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	MSM/Ms
rs6342442					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21320652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2630	CpG island 2630	within coordinates
Gm12043	predicted gene 12043	within coordinates
Rr246416	regulatory region 246416	within coordinates
Rr402440	regulatory region 402440	485 bp upstream
Tssr3440	transcription start site region 3440	119 bp downstream
Tssr3441	transcription start site region 3441	149 bp downstream
Tssr3442	transcription start site region 3442	340 bp upstream
Tssr100572	transcription start site region 100572	81 bp upstream
Tssr107064	transcription start site region 107064	167 bp upstream
Tssr107065	transcription start site region 107065	69 bp upstream
Tssr107066	transcription start site region 107066	within coordinates
Tssr107067	transcription start site region 107067	14 bp downstream
Tssr107068	transcription start site region 107068	26 bp downstream
Tssr107069	transcription start site region 107069	491 bp downstream
Tssr107070	transcription start site region 107070	612 bp downstream
Ugp2	UDP-glucose pyrophosphorylase 2	within coordinates