rs6342479 SNP Detail

Summary

• ID
  rs6342479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111451717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGC GCACCACCTG CGTGAACACG
  Y
  GGTCCACCAT CGTTTTGCTC TTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8748514	WI_WGS_12_105753748	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6342479					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111451717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5148	CpG island 5148	within coordinates
Gm266	predicted gene 266	within coordinates
Gm40578	predicted gene, 40578	within coordinates
Gm56529	predicted gene, 56529	within coordinates
Rr473191	regulatory region 473191	530 bp proximal
Rr473192	regulatory region 473192	1323 bp proximal
Tssr117821	transcription start site region 117821	490 bp downstream
Tssr117822	transcription start site region 117822	525 bp downstream
Tssr117823	transcription start site region 117823	693 bp downstream
Tssr117824	transcription start site region 117824	805 bp downstream