rs6342497 SNP Detail

Summary

• ID
  rs6342497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         NNNNNNNNNN
  NNNCCCCCTC TCCCCCTTCT CAcccccccc gcctcgcngc gcggcggccc ggcggccagg
  gcgcccccAG GTCTGGCCCG TCGCCACACG GCGGCGGGCG TGGCGAGGGC GGCCCCAGAC
  AGCCGGCTGA GCNACTCGAG GAAGGAAGGA GGGCGGCGGG GGTGGGGCCG AGGGAACATC
  CTGTCTGAGC CGGGCACCGC AGACAGCGCC GTGCGCCAGC CGCCCAGACG GCGCGCCGGG
  Y
  CAGCAGCGCG GGGTACGCGC GAGGGGGGCG GGGGAGCGGG AGCACGCGCG TGCGCGGCCG
  AGGCGCCAGG CGCGCGCCCC GGTCGGGGCT GGGGACGCGC GCGCAGCCTG CAGTGTGCAG
  CCCGCCGGGA GCCACAATAG GCCAGAcggc gcgcgcgccc gaggggctgg ctggcgcggg
  gccgcgcggc gccgcTGGCT TCGTTCCCTC CCCTCCCCCG CCCGCCGCCC TCGCTGTCCC
  CCGGGCGGCC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8748532	WI_WGS_3_30912738	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6342497					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	739 bp downstream
Rr397631	regulatory region 397631	923 bp downstream
Rr574879	regulatory region 574879	833 bp distal
Rr574880	regulatory region 574880	442 bp distal
Rr574881	regulatory region 574881	within coordinates
Rr574882	regulatory region 574882	396 bp proximal
Rr574883	regulatory region 574883	427 bp proximal
Rr574884	regulatory region 574884	1091 bp proximal
Skil	SKI-like	370 bp upstream
Tssr28706	transcription start site region 28706	833 bp downstream
Tssr28707	transcription start site region 28707	690 bp downstream
Tssr28708	transcription start site region 28708	52 bp downstream
Tssr28709	transcription start site region 28709	28 bp downstream
Tssr28710	transcription start site region 28710	11 bp downstream
Tssr28711	transcription start site region 28711	197 bp upstream
Tssr28712	transcription start site region 28712	221 bp upstream
Tssr28713	transcription start site region 28713	312 bp upstream
Tssr28714	transcription start site region 28714	1157 bp upstream
Tssr28715	transcription start site region 28715	1634 bp upstream
Tssr32911	transcription start site region 32911	1087 bp downstream