rs6342917 SNP Detail

Summary

• ID
  rs6342917
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21320716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT TTCTCCAGCC CATAAATAGC
  M
  GGGACTCGGA GATGCTGCGA ATTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	MSM/Ms
ss8748955	WI_WGS_11_21388849	WI	MOUSE	f	SNP	C	A
ss131782966	ENSMUSSNP4028127	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	MSM/Ms
rs6342917					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21320716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2630	CpG island 2630	within coordinates
Gm12043	predicted gene 12043	within coordinates
Rr246416	regulatory region 246416	within coordinates
Rr402440	regulatory region 402440	421 bp upstream
Tssr3440	transcription start site region 3440	55 bp downstream
Tssr3441	transcription start site region 3441	85 bp downstream
Tssr3442	transcription start site region 3442	276 bp upstream
Tssr100572	transcription start site region 100572	17 bp upstream
Tssr107064	transcription start site region 107064	231 bp upstream
Tssr107065	transcription start site region 107065	133 bp upstream
Tssr107066	transcription start site region 107066	60 bp upstream
Tssr107067	transcription start site region 107067	43 bp upstream
Tssr107068	transcription start site region 107068	27 bp upstream
Tssr107069	transcription start site region 107069	427 bp downstream
Tssr107070	transcription start site region 107070	548 bp downstream
Ugp2	UDP-glucose pyrophosphorylase 2	within coordinates