rs6342962 SNP Detail

Summary

• ID
  rs6342962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:97308455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCCCGC GTGGCAGCTC
  ACAACTGTCT GTTACTACAG GATCAATCAC CCTCACACAG ACACATGCAG GCAAAGCATC
  AGTGCACATA AAATAAAAAT AAATAAATTA TAAAAAAATG TTTGAGGGGA ATGTTTTTAG
  GAAGACAGCC TGGATCCTGC TGGGGTGGGG CAGGTTTCAT GGTTCCAGCT TCAGCTGAGG
  R
  CGCTGGACCT GGGGAACAAG CCTTTCGTGT GGGCAGTATG GATGAGGGAG GCCTTCTCTG
  TCCTCTCAGG GCAACCCTGA ACGCATGGGG AGAGGATGCA GTGATGTTGG CAGAGCTGGG
  AGTGGGGGTG AGGGAGGGTG TGGCATAACA AAGCAGGGCA GTGTGGGAGT GGGCAGTGGG
  TTGCCTCATC ATCCCTCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8749000	WI_WGS_11_98178421	WI	MOUSE	f	SNP						A		G
ss37292600	NES08563205	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A		A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6342962					SNP	A	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37292600	NES08563205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97308455 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	Intron
Cpgi3698	CpG island 3698	1347 bp distal
Gm57393	predicted gene, 57393	within coordinates
Rr455766	regulatory region 455766	1597 bp distal
Rr455767	regulatory region 455767	596 bp distal
Rr455768	regulatory region 455768	1286 bp distal