rs6343006 SNP Detail

Summary

• ID
  rs6343006
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:97308481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTTACT ACAGGATCAA
  TCACCCTCAC ACAGACACAT GCAGGCAAAG CATCAGTGCA CATAAAATAA AAATAAATAA
  ATTATAAAAA AATGTTTGAG GGGAATGTTT TTAGGAAGAC AGCCTGGATC CTGCTGGGGT
  GGGGCAGGTT TCATGGTTCC AGCTTCAGCT GAGGACGCTG GACCTGGGGA ACAAGCCTTT
  S
  GTGTGGGCAG TATGGATGAG GGAGGCCTTC TCTGTCCTCT CAGGGCAACC CTGAACGCAT
  GGGGAGAGGA TGCAGTGATG TTGGCAGAGC TGGGAGTGGG GGTGAGGGAG GGTGTGGCAT
  AACAAAGCAG GGCAGTGTGG GAGTGGGCAG TGGGTTGCCT CATCATCCCT CATTGCAAGG
  ATACTTTGAA ACTTCTTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8749044	WI_WGS_11_98178447	WI	MOUSE	f	SNP							C		G
ss37292599	NES08563206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6343006					SNP	C	C	C	C	C	C	C	C	G	C	C	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37292599	NES08563206	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97308481 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	Intron
Cpgi3698	CpG island 3698	1373 bp distal
Gm57393	predicted gene, 57393	within coordinates
Rr455766	regulatory region 455766	1623 bp distal
Rr455767	regulatory region 455767	622 bp distal
Rr455768	regulatory region 455768	1312 bp distal