rs6343828 SNP Detail

Summary

• ID
  rs6343828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88970203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCGGGG TTTACTGCTG
  TCCTGCAGGG CCGCCTCGCC TACTGTGCCC TCCGCTACGA CCCCGGACCA GCCCAGGTCA
  CGTCCGTGAG AAGGGATCAT GAAGCACTTG GTAGCAGCCT GGCTTTTGGT TGGACTCAGC
  CTCGGGGTGC CCCAGTTCGG CAAAGGTGAG GTGGCTGGGC AGGGGTCCCT GGATGAGGGA
  M
  GGGCGGGGAG CACCTTTGGA AATGCCGCTC AAGGGGCCAC AGTGGGTCCT CAGTGCGTGC
  ACGGCGTGAG GAGCGCTACG AAAGAGGCGA TGCTCCCTGG ATACCCTGCC AAAGTGCTAG
  CAAAGTCCGT GTGGAGTGCC CCAGGCTGAG CCTGGGAAGA GGGTGCGATC TAGAAAATAA
  GAAGATTGAG GGGGTGTGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8749871	WI_WGS_13_85955498	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6343828					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88970203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	within coordinates
Cpgi5920	CpG island 5920	1554 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3	within coordinates
Rr483401	regulatory region 483401	432 bp distal
Rr483402	regulatory region 483402	804 bp distal
Tssr120562	transcription start site region 120562	564 bp downstream
Tssr120563	transcription start site region 120563	504 bp downstream
Tssr120564	transcription start site region 120564	493 bp downstream
Tssr120565	transcription start site region 120565	481 bp downstream
Tssr120566	transcription start site region 120566	461 bp downstream
Tssr120567	transcription start site region 120567	408 bp downstream
Tssr120568	transcription start site region 120568	400 bp downstream
Tssr120569	transcription start site region 120569	365 bp downstream
Tssr120570	transcription start site region 120570	345 bp downstream
Tssr120571	transcription start site region 120571	323 bp downstream
Tssr120572	transcription start site region 120572	170 bp downstream
Tssr120573	transcription start site region 120573	142 bp downstream
Tssr120574	transcription start site region 120574	108 bp downstream
Tssr120575	transcription start site region 120575	1507 bp upstream
Tssr123374	transcription start site region 123374	289 bp upstream