rs6343897 SNP Detail

Summary

• ID
  rs6343897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78247154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTTGGCC TTGGTTCCTT
  GCTTGCAAAA GACCTACTAT GGGGCTGGAG AGATGGGTTA GTGGTTAAGA GCACCAATAG
  CTCTTCCAAA GGTCCTGAGT TCAAATCCCA GCAACCACAT GGAAAAAAAA AAAAGACCTA
  CTATGCAGGA AACATCACTT TCTCTATAAA CAGCAGGAGT CAGTGCTGGC TATGTTAAGG
  R
  GTGGGGTGGA GGATTAAACA TAAGCCCCTC AGTCCCCCAC CAACTCCTGT GAGGGTTCTT
  CAGCTACCTT CCCAGGCACC CACCTGCTGG AGGGGCTTGT CCTGCATCCA CATGCAGTAA
  AACAGTCCTT TCCATACTTT TAGCAGTTCA TCTGGAGTGA AACCACCTGC ATCACAAGAG
  CAACAGTGAG ACTTAGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8749940	WI_WGS_10_78861900	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6343897					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78247154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1780	CpG island 1780	999 bp proximal
Rr225082	regulatory region 225082	246 bp proximal
Rrp1	ribosomal RNA processing 1	within coordinates
Tssr3266	transcription start site region 3266	1600 bp downstream
Tssr98302	transcription start site region 98302	1531 bp downstream
Tssr98303	transcription start site region 98303	1629 bp downstream