rs6344037 SNP Detail

Summary

• ID
  rs6344037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78247228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAGCTCT TCCAAAGGTC
  CTGAGTTCAA ATCCCAGCAA CCACATGGAA AAAAAAAAAA GACCTACTAT GCAGGAAACA
  TCACTTTCTC TATAAACAGC AGGAGTCAGT GCTGGCTATG TTAAGGGGTG GGGTGGAGGA
  TTAAACATAA GCCCCTCAGT CCCCCACCAA CTCCTGTGAG GGTTCTTCAG CTACCTTCCC
  R
  GGCACCCACC TGCTGGAGGG GCTTGTCCTG CATCCACATG CAGTAAAACA GTCCTTTCCA
  TACTTTTAGC AGTTCATCTG GAGTGAAACC ACCTGCATCA CAAGAGCAAC AGTGAGACTT
  AGTGAGCCCT GGAACCTACC TTCCCGAGCC AGGAAGGAAA CATGACTGCC TGAACTACTC
  TTAACAATAA TACGACTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8750080	WI_WGS_10_78861974	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6344037					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78247228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1780	CpG island 1780	925 bp proximal
Rr225082	regulatory region 225082	172 bp proximal
Rrp1	ribosomal RNA processing 1	within coordinates
Tssr3266	transcription start site region 3266	1526 bp downstream
Tssr98302	transcription start site region 98302	1457 bp downstream
Tssr98303	transcription start site region 98303	1555 bp downstream